miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|90314895|gb|DY824295.1|DY824295 TCGTTCTCATCGGTCTCGATTCACAGGCCCGATCTTCTTCTCGAAGCAGTTGGACTTACGAATCTCTCAAGAATTTCCGT
GAAATCTCTGCGGTCGTTCAGACTCATCTCAAACAGTGTTTACCTCTCACTATGTTGCGCTCTCATAGCATCTGCAGTCG
GAGCATACTTTCACATCATATGGAACATCGGTGGCCTTCTAACCACCTTAGCAACATTGGGTTGCATGTTTTGGCTACTC
GCCACTTCTCCACACGAAGAGCAAAAAAAGAGTTTCACTATTAATGGCGTCTTCCTTTCTCCAAGGAGCTTCCATTGGTC
CCTTAATCGAGTTAGCCCTAGATTTTGACTCAAGCATTTTGGTGAGCGCATTTGTAGGGACTGGAATCGCGTTTGCTTGT
TTCTCAGGGGCAGCCATGTTAGCAAAACGCAGAGAGTATCTTTATCTTGGAGGACTTCTTTCCTCTGGTGTTTCAATGCT
TTTCTGGTTACATTTCGCTTCCTCTATTTTCGGTGGTTCTGTTGGCCTCTTCAAGATTGAGTTGTATCTTGGGCTGTTGG
TGTTTGTTGGGTACATTGTGTACGACACCCAGGAGATTATCGAAAAGGCCCACCTTGGAGATTTGGACTATGTGAAACAT
GCTCTCATGCTTTTTACCGATATCATTGCCGTTTTTGTTCGCATTCTTATCATCATGTTGAAAA




Most similar to sp|Q9LD45|BI1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LD45|BI1_ARATH Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1
           PE=1 SV=1
          Length = 247

 Score =  203 bits (517), Expect(2) = 5e-65
 Identities = 101/147 (68%), Positives = 119/147 (80%)
 Frame = +2

Query: 263 KKRVSLLMASSFLQGASIGPLIELALDFDSSILVSAFVGTGIAFACFSGAAMLAKRREXX 442
           +KR+SLL  S+ L+GAS+GPLI++A+D D SIL++AFVGT IAF CFS AAMLA+RRE  
Sbjct: 87  QKRLSLLFVSAVLEGASVGPLIKVAIDVDPSILITAFVGTAIAFVCFSAAAMLARRREYL 146

Query: 443 XXXXXXXXXVSMLFWLHFASSIFGGSVGLFKIELYLGLLVFVGYIVYDTQEIIEKAHLGD 622
                    +SML WL FASSIFGGS  +FK ELY GLL+FVGY+V DTQEIIEKAHLGD
Sbjct: 147 YLGGLLSSGLSMLMWLQFASSIFGGSASIFKFELYFGLLIFVGYMVVDTQEIIEKAHLGD 206

Query: 623 LDYVKHALMLFTDIIAVFVRILIIMLK 703
           +DYVKH+L LFTD +AVFVRILIIMLK
Sbjct: 207 MDYVKHSLTLFTDFVAVFVRILIIMLK 233



 Score = 65.9 bits (159), Expect(2) = 5e-65
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
 Frame = +1

Query: 76  SVKSLRSFRLISNSV-------YLSLCCALIASAVGAYFHIIWNIXXXXXXXXXXXCMFW 234
           S  SL++FR IS +V       YL+LCCAL+ASA GAY H++WNI            M W
Sbjct: 18  SYDSLKNFRQISPAVQNHLKRVYLTLCCALVASAFGAYLHVLWNIGGILTTIGCIGTMIW 77

Query: 235 LLATSPHEEQKK 270
           LL+  P+E QK+
Sbjct: 78  LLSCPPYEHQKR 89


>sp|Q9MBD8|BI1_ORYSJ Bax inhibitor 1 OS=Oryza sativa subsp. japonica
           GN=BI1 PE=2 SV=1
          Length = 249

 Score =  192 bits (488), Expect(2) = 3e-56
 Identities = 93/149 (62%), Positives = 119/149 (79%)
 Frame = +2

Query: 257 KSKKRVSLLMASSFLQGASIGPLIELALDFDSSILVSAFVGTGIAFACFSGAAMLAKRRE 436
           + +KR  +L+A++ L+GAS+GPLI+LA+DFDSSILV+AFVGT IAF CF+ AA++AKRRE
Sbjct: 86  EERKRFGILLAAALLEGASVGPLIKLAVDFDSSILVTAFVGTAIAFGCFTCAAIVAKRRE 145

Query: 437 XXXXXXXXXXXVSMLFWLHFASSIFGGSVGLFKIELYLGLLVFVGYIVYDTQEIIEKAHL 616
                      +S+L WL FA+SIFG S G F  E+Y GLL+F+GY+VYDTQEIIE+AH 
Sbjct: 146 YLYLGGLLSSGLSILLWLQFAASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIERAHH 205

Query: 617 GDLDYVKHALMLFTDIIAVFVRILIIMLK 703
           GD+DY+KHAL LFTD +AV VRIL+IMLK
Sbjct: 206 GDMDYIKHALTLFTDFVAVLVRILVIMLK 234



 Score = 47.8 bits (112), Expect(2) = 3e-56
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
 Frame = +1

Query: 85  SLRSFRLISNSV-------YLSLCCALIASAVGAYFHIIWNIXXXXXXXXXXXCMFWLLA 243
           SL++FR IS +V       YL+LC AL ASAVGAY H+  NI            + WL +
Sbjct: 22  SLKNFRQISPAVQSHLKLVYLTLCVALAASAVGAYLHVALNIGGMLTMLGCVGSIAWLFS 81

Query: 244 TSPHEEQKK 270
               EE+K+
Sbjct: 82  VPVFEERKR 90


>sp|Q9IA79|BI1_PAROL Probable Bax inhibitor 1 OS=Paralichthys
           olivaceus GN=tmbim6 PE=2 SV=1
          Length = 237

 Score =  117 bits (293), Expect(2) = 5e-29
 Identities = 59/145 (40%), Positives = 92/145 (63%)
 Frame = +2

Query: 263 KKRVSLLMASSFLQGASIGPLIELALDFDSSILVSAFVGTGIAFACFSGAAMLAKRREXX 442
           KKR+++L   +FL G  + P ++  +  + SI+V+AF+GT + F CF+ +A+ AKRR   
Sbjct: 82  KKRLAILAGFAFLTGVGLCPTLDFVIAINPSIIVTAFLGTSVIFVCFTLSALYAKRRSYL 141

Query: 443 XXXXXXXXXVSMLFWLHFASSIFGGSVGLFKIELYLGLLVFVGYIVYDTQEIIEKAHLGD 622
                    +S+LF +   +  FG SV LFK  +YLGLL+  G+++ DTQ IIEKA  GD
Sbjct: 142 FLGGTLMSGLSILFLMSMMNMFFG-SVMLFKAHMYLGLLIMCGFVLXDTQLIIEKAENGD 200

Query: 623 LDYVKHALMLFTDIIAVFVRILIIM 697
            DYV H++ LF D I +F ++++I+
Sbjct: 201 KDYVWHSVDLFLDFITIFRKLMVIL 225



 Score = 31.6 bits (70), Expect(2) = 5e-29
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
 Frame = +1

Query: 73  ISVKSLRSFRLISNS-------VYLSLCCALIASAVGAYFHIIWNI--XXXXXXXXXXXC 225
           I+  SL  F  IS+S       VY SL   +  +A G+Y H++  +              
Sbjct: 8   INFDSLFKFSQISHSTQVHLKNVYSSLAVCMFVAAAGSYVHVVTRLFQGGMLSVLGSLGM 67

Query: 226 MFWLLATSPH--EEQKKSFTI 282
           MFW LA +PH  E +KK   I
Sbjct: 68  MFW-LAMTPHNSETEKKRLAI 87


           PE=2 SV=2
          Length = 237

 Score =  122 bits (307), Expect(2) = 2e-28
 Identities = 61/157 (38%), Positives = 97/157 (61%)
 Frame = +2

Query: 227 CFGYSPLLHTKSKKRVSLLMASSFLQGASIGPLIELALDFDSSILVSAFVGTGIAFACFS 406
           C   +P  H   +KR+ LL   +FL G  +GP +EL +  + SIL +AF+GT + F CFS
Sbjct: 70  CLMATPHSHETEQKRLGLLAGFAFLTGVGLGPALELCIAINPSILPTAFMGTAMIFTCFS 129

Query: 407 GAAMLAKRREXXXXXXXXXXXVSMLFWLHFASSIFGGSVGLFKIELYLGLLVFVGYIVYD 586
            +A+ A+RR            +S++F +    ++F GS+ LF+  LY+GLLV  G++++D
Sbjct: 130 LSALYARRRSYLFLGGILMSAMSLMF-VSSLGNLFFGSIWLFQANLYMGLLVMCGFVLFD 188

Query: 587 TQEIIEKAHLGDLDYVKHALMLFTDIIAVFVRILIIM 697
           TQ IIEKA  GD DY+ H + LF D + +F ++++I+
Sbjct: 189 TQLIIEKAEHGDKDYIWHCIDLFLDFVTLFRKLMLIL 225



 Score = 23.9 bits (50), Expect(2) = 2e-28
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 118 VYLSLCCALIASAVGAYFHII 180
           VY S    +  +A GAY H++
Sbjct: 30  VYASFALCMFVAAAGAYVHVV 50


>sp|Q9D2C7|BI1_MOUSE Bax inhibitor 1 OS=Mus musculus GN=Tmbim6 PE=2
           SV=1
          Length = 237

 Score =  120 bits (300), Expect = 1e-26
 Identities = 61/153 (39%), Positives = 95/153 (62%)
 Frame = +2

Query: 239 SPLLHTKSKKRVSLLMASSFLQGASIGPLIELALDFDSSILVSAFVGTGIAFACFSGAAM 418
           +P  H   +KR+ LL   +FL G  +GP +EL +  + SIL +AF+GT + F CFS +A+
Sbjct: 74  TPHSHETEQKRLGLLAGFAFLTGVGLGPALELCIAVNPSILPTAFMGTAMIFTCFSLSAL 133

Query: 419 LAKRREXXXXXXXXXXXVSMLFWLHFASSIFGGSVGLFKIELYLGLLVFVGYIVYDTQEI 598
            A+RR            +S++  L    ++F GS+ LF+  LYLGLLV  G++++DTQ I
Sbjct: 134 YARRRSYLFLGGILMSAMSLML-LSSLGNLFFGSIWLFQANLYLGLLVMCGFVLFDTQLI 192

Query: 599 IEKAHLGDLDYVKHALMLFTDIIAVFVRILIIM 697
           IEKA  GD DY+ H + LF D + +F ++++I+
Sbjct: 193 IEKAEHGDKDYIWHCVDLFLDFVTLFRKLMLIL 225